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  lm2E

UMR 6197

Lab.
Microbiology of  Extreme Environments




Previous workshops





4th EBAME Workshop on Computational
Microbial Ecogenomics

September 29 - October 6, 2018 in Brest - France




2018 EBAME previsional workshop program
All lectures and labs will take place at the Marine Science Institute (IUEM), amphi D



  Saturday, Sept. 29
  Sunday, Sept.
30
  Monday, Oct.
1
  Tuesday, Oct.
2

09:00
12:00


Trip to market


Meren
Studyig microdiversity with Anvi'o
(Lecture + Lab)

Nick Loman
Portable DNA sequencing for environmental metagenomics
(Lecture) 
12:00
14:00
-
- Lunch Lunch

14:00
17:00

Faculty and Participant arrival at Locmaria Plouzané
for check in.
(workshop housing at nemea rental)

Check in from
16:00 to 17:00
Workshop welcoming and introduction

Meren
The anvi'o interactive interface
(Lecture + lab)
Meren
Phylogenomics with anvi'o
(Lecture)


Nick Loman
analysing nanopore data
(Lab)
17:00
20:00



18:00
Icebreaker drink




Tom Delmont
Metagenomics Binning and Refinement
(Lecture + lab)
 




Meren
Pangenomics
with Anvi'o
(Lecture + lab)


Julie Reveillaud
From genome-resolved metagenomics to metapangenomics: A Wolbachia story with wild C.ulex pipiens individuals
(Lecture)

Meren
Reproducible science practices with anvi'o
(Lecture)





  Wed., Oct.
3
  Thursday, Oct
4
  Friday, Oct.
5
  Saturday, Oct.
6

09:00
12:00

Martial Marbouty
Contact genomic, an alternative use of 3C data for assembling (Meta)genome (lecture + Lab)

Christopher Quince
strain resolution
(Lecture + lab)
Damien Eveillard
Metabolic Network
Reconstruction
(Lecture +Lab)
Room check out
12:00
14:00
Lunch Lunch Lunch

14:00
17:00


Adress from Anne-Marie Treguier, Head of the ISblue Graduate school of research

Christopher Quince
Introduction to metagenome bionformatics
(Lecture)
Marie-Agnès Petit
Virus Genomics
(temp.)
(Lecture + lab)
Antonio Fernández-Guerra
Mining the marine microbiome: from the known to the unknown
(Lecture + Lab)

17:00
20:00



Christopher Quince
metagenomics binning
(Lecture + lab)

Samuel Chaffron
Ecological networks reconstruction
(Lecture + Lab)
Questions and
Discussions


End of the workshop




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