IUEM Banner,

  lm2E





Previous workshops





5th EBAME Workshop on Computational

Microbial Ecogenomics

October 19 - November 2 , 2019 in Brest - France


2019 EBAME previsional workshop program
All lectures and labs will take place at the Marine Science Institute (IUEM), amphi D


  Saturday
Oct. 19

Sunday
Oct. 20
Monday
Oct. 21
Tuesday
Oct. 22

09:00
12:00


Trip to market



Meren
The anvi'o interactive interface
(Lecture + lab)



Meren
Metagenomics Binning and Refinement
(lab)


12:00
14:00
-
- Lunch Lunch

14:00
18:00

Faculty and Participant arrival at Locmaria Plouzané
for check in.
(workshop housing at nemea rental)

Check in from
16:00 to 17:00

Icebreaker
19:00
Maignien
Workshop Presentation

Meren
Introduction to Microbial omics

Overview of ‘omics strategies

(Lecture)



Meren
Genome-resolved metagenomics and the power of short-read recruitment

(Lecture)

Meren
Microbial Population Genetics
(Lecture + Lab)






  Wednesday
Oct. 23
  Thursday
Oct. 24
  Friday,
Oct. 25
  Saturday
Oct. 26

09:00
12:00

Meren
Pangenomics
(Lecture + lab)

Meren
Metapangenomics
(Lecture)
Shapiro
Population
genomics

(lecture)

Simmons
 Perspectives on the microbiome industry
(Lecture)



Fernandez
-Guerra
known and unknown genes in the environment
(lecture)

12:00
14:00
Lunch Lunch Lunch -

14:00
18:00

Meren
Phylogenomics
with Anvi'o
(Lecture + lab)


Meren
Phylogenetics vs Phylogenomics vs
Pangenomics
(Lecture)

Meren
tRNA
sequencing and
modification
(Lecture)

Reveillaud
A Wolbachia story with wild C.ulex pipiens individuals
(Lecture)

Fernandez
-Guerra
known and unknown genes in the environment
(Lab)






  Sunday
Oct. 27

Monday
Oct. 28
Tuesday
Oct. 29
Wednesday
Oct. 30

09:00
12:00
Outdoor activity
(weather permitting)

James
Long read genomics with Nanopore
(Lecture)


Quince
metagenomics binning
(Lecture + lab)

Quince
Strain resolution (Lecture + lab)
12:00
14:00
-
Lunch Lunch Lunch

14:00
18:00

Outdoor activity
(weather permitting)
James
Long read genomics with Nanopore
(Lab)

Quince
Strain resolution (Lecture + lab)

Quince
Machine learning applications for microbial omic’s (Lecture + lab)





  Thursday
Oct. 31

Friday
Nov. 1
Saturday
Nov. 2



09:00
12:00
Marbouti
Contact genomic: an alternative use of 3C/Hi-C data for (Meta)genomes annotations and scaffolding
Lecture

Eveillard
Metabolic
Network reconstruction
(Lecture + lab)

Housing check out
9:00

 
12:00
14:00
-
- Lunch

14:00
18:00

Marbouti
Contact genomic: an alternative use of 3C/Hi-C data for (Meta)genomes annotations and scaffolding
Lab

Chaffron
Omics-based species networks inference
(Lecture + lab)




logo UBO, logo CNRS
logo ifremer, isblue